S

DNA Protein RNA

SegmentizeGappedSequence

DNA bio

Sequence

DNA Protein RNA bio

SequenceAlignment

bio

SequenceTranscription

DNA

SequenceTranslation

DNA RNA bio

SequenceType

GappedSequence IUPACGappedSequence IUPACSequence Sequence CodonSequence GappedCodonSequence GappedSequence IUPACGappedSequence IUPACSequence Sequence GappedSequence IUPACSequence Sequence Sequence

SparseAlignment

DNA bio

SpecialAminoAcid

Protein

StatusMessage

bio

StringAttribute

attribute

StringConverter

bio

Symbol

bio

SymbolConvert

DNA Protein RNA

SymbolSequenceTranscription

DNA

SymbolSequenceTranslation

DNA RNA

send

Attribute Codon StringAttribute

seq

Sequence Codon

seq_list

PhylipReader

seq_num

PamlReader

seq_size

PamlReader

sequence_width

FastaWriter PamlWriter

setCurrentSequenceName

PhylipListener

setSequenceCount

PhylipListener

setSitesCount

PhylipListener

split

SegmentizeGappedSequence

startFile

PhylipListener

str

Description Id