Class

bio

FastaWriter

Related Doc: package bio

Permalink

class FastaWriter extends AnyRef

Linear Supertypes
AnyRef, Any
Ordering
  1. Alphabetic
  2. By inheritance
Inherited
  1. FastaWriter
  2. AnyRef
  3. Any
  1. Hide All
  2. Show all
Visibility
  1. Public
  2. All

Instance Constructors

  1. new FastaWriter(filen: String)

    Permalink
  2. new FastaWriter(f: File)

    Permalink
  3. new FastaWriter(fout: FileOutputStream)

    Permalink

Type Members

  1. class FastaWriterException extends Exception

    Permalink

Value Members

  1. final def !=(arg0: Any): Boolean

    Permalink
    Definition Classes
    AnyRef → Any
  2. final def ##(): Int

    Permalink
    Definition Classes
    AnyRef → Any
  3. final def ==(arg0: Any): Boolean

    Permalink
    Definition Classes
    AnyRef → Any
  4. final def asInstanceOf[T0]: T0

    Permalink
    Definition Classes
    Any
  5. def clone(): AnyRef

    Permalink
    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  6. final def eq(arg0: AnyRef): Boolean

    Permalink
    Definition Classes
    AnyRef
  7. def equals(arg0: Any): Boolean

    Permalink
    Definition Classes
    AnyRef → Any
  8. def finalize(): Unit

    Permalink
    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )
  9. val fout: FileOutputStream

    Permalink
  10. final def getClass(): Class[_]

    Permalink
    Definition Classes
    AnyRef → Any
  11. def hashCode(): Int

    Permalink
    Definition Classes
    AnyRef → Any
  12. final def isInstanceOf[T0]: Boolean

    Permalink
    Definition Classes
    Any
  13. final def ne(arg0: AnyRef): Boolean

    Permalink
    Definition Classes
    AnyRef
  14. final def notify(): Unit

    Permalink
    Definition Classes
    AnyRef
  15. final def notifyAll(): Unit

    Permalink
    Definition Classes
    AnyRef
  16. var sequence_width: Int

    Permalink
  17. final def synchronized[T0](arg0: ⇒ T0): T0

    Permalink
    Definition Classes
    AnyRef
  18. def toString(): String

    Permalink
    Definition Classes
    AnyRef → Any
  19. final def wait(): Unit

    Permalink
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  20. final def wait(arg0: Long, arg1: Int): Unit

    Permalink
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  21. final def wait(arg0: Long): Unit

    Permalink
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  22. def write[T <: AbstractSequence](list: List[T]): Unit

    Permalink

    Write Fasta Fasta format.

    Write Fasta Fasta format.

    Example:

    import bio.io.Control._ val tmpfn = File.createTempFile("BioScala-Fasta-",".fa") using(new FileOutputStream(tmpfn)) { stream => new FastaWriter(stream).write(seqlist) }

Inherited from AnyRef

Inherited from Any

Ungrouped