SparseAlignment

abstract val gap: GapType

final def !=(arg0: Any): Boolean

final def ##(): Int

final def ==(arg0: Any): Boolean

final def asInstanceOf[T0]: T0

def clone(): AnyRef

final def eq(arg0: AnyRef): Boolean

def equals(arg0: Any): Boolean

def finalize(): Unit

final def getClass(): Class[_]

def hashCode(): Int

final def isInstanceOf[T0]: Boolean

final def ne(arg0: AnyRef): Boolean

final def notify(): Unit

final def notifyAll(): Unit

def removeSparseColumns(in: Alignment, min_symbols: Int): (Alignment, List[Int])

Remove columns, i.e.

def removeSparseRows(in: Alignment, min_symbols: Int): (Alignment, List[Int])

Remove sparse rows, i.e.

final def synchronized[T0](arg0: ⇒ T0): T0

def toString(): String

def transpose(m: Alignment): Alignment

final def wait(): Unit

final def wait(arg0: Long, arg1: Int): Unit

final def wait(arg0: Long): Unit