SparseAlignment

Value Members

1. final def !=(arg0: Any): Boolean

   

   Definition Classes

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2. final def ##(): Int

   

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3. final def ==(arg0: Any): Boolean

   

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4. final def asInstanceOf[T0]: T0

   

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5. def clone(): AnyRef

   

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   protected[java.lang]

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6. final def eq(arg0: AnyRef): Boolean

   

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7. def equals(arg0: Any): Boolean

   

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8. def finalize(): Unit

   

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   protected[java.lang]

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   @throws( classOf[java.lang.Throwable] )

9. val gap: Gap.type

   

   Definition Classes

   SparseAlignment → SparseAlignment

10. final def getClass(): Class[_]

    

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11. def hashCode(): Int

    

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12. final def isInstanceOf[T0]: Boolean

    

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13. final def ne(arg0: AnyRef): Boolean

    

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14. final def notify(): Unit

    

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15. final def notifyAll(): Unit

    

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16. def removeSparseColumns(in: Alignment, min_symbols: Int): (Alignment, List[Int])

    

    Remove columns, i.e.

    Remove columns, i.e. columns that contain less than min_symbols

    Definition Classes

    SparseAlignment

17. def removeSparseRows(in: Alignment, min_symbols: Int): (Alignment, List[Int])

    

    Remove sparse rows, i.e.

    Remove sparse rows, i.e. rows that contain less than min_symbols

    Definition Classes

    SparseAlignment

18. final def synchronized[T0](arg0: ⇒ T0): T0

    

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19. def toString(): String

    

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20. def transpose(m: Alignment): Alignment

    

    Definition Classes

    SparseAlignment

21. final def wait(): Unit

    

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22. final def wait(arg0: Long, arg1: Int): Unit

    

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23. final def wait(arg0: Long): Unit

    

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