Class

bio

SequenceAlignment

Related Doc: package bio

Permalink

class SequenceAlignment[Sequence] extends AnyRef

Alignment container for Sequences. Each sequence has an ID that can not be lost. The reason for this class are the functions that update columns. (NYI)

Linear Supertypes
AnyRef, Any
Ordering
  1. Alphabetic
  2. By inheritance
Inherited
  1. SequenceAlignment
  2. AnyRef
  3. Any
  1. Hide All
  2. Show all
Visibility
  1. Public
  2. All

Instance Constructors

  1. new SequenceAlignment(sequencelist: List[Sequence])

    Permalink

Type Members

  1. type Aln = List[Sequence]

    Permalink

Value Members

  1. final def !=(arg0: Any): Boolean

    Permalink
    Definition Classes
    AnyRef → Any

  2. final def ##(): Int

    Permalink
    Definition Classes
    AnyRef → Any

  3. final def ==(arg0: Any): Boolean

    Permalink
    Definition Classes
    AnyRef → Any

  4. final def asInstanceOf[T0]: T0

    Permalink
    Definition Classes
    Any

  5. def clone(): AnyRef

    Permalink
    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  6. final def eq(arg0: AnyRef): Boolean

    Permalink
    Definition Classes
    AnyRef

  7. def equals(arg0: Any): Boolean

    Permalink
    Definition Classes
    AnyRef → Any

  8. def finalize(): Unit

    Permalink
    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )

  9. final def getClass(): Class[_]

    Permalink
    Definition Classes
    AnyRef → Any

  10. def hashCode(): Int

    Permalink
    Definition Classes
    AnyRef → Any

  11. final def isInstanceOf[T0]: Boolean

    Permalink
    Definition Classes
    Any

  12. val list: List[Sequence]

    Permalink

  13. final def ne(arg0: AnyRef): Boolean

    Permalink
    Definition Classes
    AnyRef

  14. final def notify(): Unit

    Permalink
    Definition Classes
    AnyRef

  15. final def notifyAll(): Unit

    Permalink
    Definition Classes
    AnyRef

  16. final def synchronized[T0](arg0: ⇒ T0): T0

    Permalink
    Definition Classes
    AnyRef

  17. def toList: Aln

    Permalink

  18. def toString(): String

    Permalink
    Definition Classes
    AnyRef → Any

  19. final def wait(): Unit

    Permalink
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  20. final def wait(arg0: Long, arg1: Int): Unit

    Permalink
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  21. final def wait(arg0: Long): Unit

    Permalink
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

Inherited from AnyRef

Inherited from Any

Ungrouped