PhylipWriter

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1. final def !=(arg0: Any): Boolean

   

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20. def writeFile[T <: AbstractSequence](file: File, list: List[T]): Unit

    

    PhylipWriter writes a list of sequences to a file in PHYLIP format, using BioJava's PHYLIPFileFormat.writer.

    PhylipWriter writes a list of sequences to a file in PHYLIP format, using BioJava's PHYLIPFileFormat.writer.

    There are two problems with this implementation: First the BioJava library shortens the descriptor to 9 chars. The other BioJava problem is that when writing an alignment the sequences can have different sizes - they simply write to file. In contrast, the BioScala implementation throws an exception.

    See also PAMLWriter for a PAML implementation of Phylip output