1. (object)
   GetORFApp
2. (object)
   GetSNPApp

1. bio
   1. (class)AbstractSequence
   2. (class)Alignment
   3. (class)Attribute
   4. (class)FastaReader
   5. (class)FastaWriter
   6. (class)GappedConvert
   7. (class)Message
   8. (class)PamlReader
   9. (class)PamlWriter
   10. (class)PhylipReader
   11. (object)
       PhylipWriter
   12. (class)SegmentizeGappedSequence
   13. (class)Sequence
   14. (class)SequenceAlignment
   15. (class)SequenceTranslation
   16. (trait)SparseAlignment
   17. (class)StatusMessage
   18. (class)StringConverter
   19. (class)Symbol
   1. bio.attribute
      1. (trait)AttributeAccess
      2. (case class)Codon
      3. (case class)Description
      4. (object)
         Error
      5. (object)
         GetCodon
      6. (object)
         GetDescription
      7. (object)
         GetDNA
      8. (object)
         GetFeature
      9. (object)
         GetGap
      10. (object)
          GetId
      11. (object)
          GetRDF
      12. (object)
          GetXML
      13. (case class)Id
      14. (object)
          Ok
      15. (class)StringAttribute
      16. (object)
          UnknownMessage
   2. bio.DNA
      1. (object)
         A
      2. (object)
         B
      3. (object)
         C
      4. (object)
         D
      5. (object)
         G
      6. (object)(class)Gap
      7. (object)
         GappedConvert
      8. (class)GappedSequence
      9. (object)
         H
      10. (class)IUPAC
      11. (object)
          IUPACGappedConvert
      12. (class)IUPACGappedSequence
      13. (object)
          IUPACNucleotideConvert
      14. (class)IUPACSequence
      15. (object)
          K
      16. (object)
          M
      17. (object)
          N
      18. (class)NTSymbol
      19. (class)Nucleotide
      20. (object)
          NucleotideConvert
      21. (object)
          R
      22. (object)
          S
      23. (object)
          SegmentizeGappedSequence
      24. (class)Sequence
      25. (object)
          SequenceTranscription
      26. (object)
          SequenceTranslation
      27. (object)
          SparseAlignment
      28. (object)
          SymbolConvert
      29. (object)
          SymbolSequenceTranscription
      30. (object)
          SymbolSequenceTranslation
      31. (object)
          T
      32. (object)
          ToDNA
      33. (object)
          ToGappedDNA
      34. (object)
          ToGappedSequence
      35. (object)
          ToSequence
      36. (object)
          V
      37. (object)
          W
      38. (object)
          Y
   3. bio.io
      1. (object)
         Control
   4. bio.Protein
      1. (object)
         *
      2. (object)
         A
      3. (class)AASymbol
      4. (class)AminoAcid
      5. (object)
         AminoAcidConvert
      6. (object)
         B
      7. (object)
         C
      8. (case class)Codon
      9. (object)(class)CodonGap
      10. (class)CodonSequence
      11. (class)CodonSymbol
      12. (object)
          D
      13. (object)
          DNAtoCodon
      14. (object)
          E
      15. (object)
          F
      16. (object)
          G
      17. (object)(class)Gap
      18. (class)GappedCodonSequence
      19. (object)
          GappedConvert
      20. (object)
          GappedDNAtoCodon
      21. (class)GappedSequence
      22. (object)
          H
      23. (class)HydrophobicAminoAcid
      24. (object)
          I
      25. (class)IUPAC
      26. (object)
          IUPACAminoAcidConvert
      27. (object)
          IUPACGappedAminoAcidConvert
      28. (object)
          IUPACGappedConvert
      29. (class)IUPACGappedSequence
      30. (class)IUPACSequence
      31. (object)
          K
      32. (object)
          L
      33. (object)
          M
      34. (object)
          N
      35. (class)NegativeAminoAcid
      36. (object)
          P
      37. (class)PositiveAminoAcid
      38. (object)
          Q
      39. (object)
          R
      40. (object)
          S
      41. (class)Sequence
      42. (class)SpecialAminoAcid
      43. (object)
          SymbolConvert
      44. (object)
          T
      45. (object)
          U
      46. (class)UnchargedAminoAcid
      47. (object)
          V
      48. (object)
          W
      49. (object)
          X
      50. (object)
          Y
      51. (object)
          Z
   5. bio.RNA
      1. (object)
         A
      2. (object)
         B
      3. (object)
         C
      4. (object)
         D
      5. (object)
         G
      6. (object)(class)Gap
      7. (object)
         GappedConvert
      8. (class)GappedSequence
      9. (object)
         H
      10. (class)IUPAC
      11. (object)
          IUPACGappedConvert
      12. (object)
          IUPACNucleotideConvert
      13. (class)IUPACSequence
      14. (object)
          K
      15. (object)
          M
      16. (object)
          N
      17. (class)NTSymbol
      18. (class)Nucleotide
      19. (object)
          NucleotideConvert
      20. (object)
          R
      21. (object)
          S
      22. (class)Sequence
      23. (object)
          SequenceTranslation
      24. (object)
          SymbolConvert
      25. (object)
          SymbolSequenceTranslation
      26. (object)
          U
      27. (object)
          V
      28. (object)
          W
      29. (object)
          Y